Julia package for multiway (inverse) covariance estimation.

Overview

TensorGraphicalModels

TensorGraphicalModels.jl is a suite of Julia tools for estimating high-dimensional multiway (tensor-variate) covariance and inverse covariance matrices.

Installation

] add https://github.com/ywa136/TensorGraphicalModels.jl

Examples

Please check out a Julia colab created for illustration of some functionalities of the package. Here are some basic examples as well:

Example code for fitting a KP inverse covariance model:

using TensorGraphicalModels

model_type = "kp"
sub_model_type = "sb" #this defines the structure of the Kronecker factors, sb = star-block
K = 3
N = 1000
d_list = [5, 10, 15]

X = gen_kronecker_data(model_type, sub_model_type, K, N, d_list) #multi-dimensional array (tensor) of dimension d_1 × … × d_K × N
Ψ_hat_list = kglasso(X)

Example code for fitting a KS inverse covariance model:

using TensorGraphicalModels

model_type = "ks"
sub_model_type = "sb" #this defines the structure of the Kronecker factors, sb = star-block
K = 3
N = 1000
d_list = [5, 10, 15]

X = gen_kronecker_data(model_type, sub_model_type, K, N, d_list, tensorize_out = false) #matrix of dimension d × N

# compute the mode-k Gram matrices (the sufficient statistics for TeraLasso)
X_kGram = [zeros(d_list[k], d_list[k]) for k = 1:K]
Xk = [zeros(d_list[k], Int(prod(d_list) / d_list[k])) for k = 1:K]
for k = 1:K
    for i = 1:N
        copy!(Xk[k], tenmat(reshape(view(X, :, i), d_list), k))
        mul!(X_kGram[k], Xk[k], copy(transpose(Xk[k])), 1.0 / N, 1.0)
    end
end

Ψ_hat_list, _ = teralasso(X_kGram)

Example code for fitting a Sylvester inverse covariance model:

using TensorGraphicalModels

model_type = "sylvester"
sub_model_type = "sb" #this defines the structure of the Kronecker factors, sb = star-block
K = 3
N = 1000
d_list = [5, 10, 15]

X = gen_kronecker_data(model_type, sub_model_type, K, N, d_list, tensorize_out = false) #matrix of dimension d × N

# compute the mode-k Gram matrices (the sufficient statistics for TeraLasso)
X_kGram = [zeros(d_list[k], d_list[k]) for k = 1:K]
Xk = [zeros(d_list[k], Int(prod(d_list) / d_list[k])) for k = 1:K]
for k = 1:K
    for i = 1:N
        copy!(Xk[k], tenmat(reshape(view(X, :, i), d_list), k))
        mul!(X_kGram[k], Xk[k], copy(transpose(Xk[k])), 1.0 / N, 1.0)
    end
end

Psi0 = [sparse(eye(d_list[k])) for k = 1:K]
fun = (iter, Psi) -> [1, time()] # NULL func
lambda = [sqrt(px[k] * log(prod(d_list)) / N) for k = 1:K] 

Ψ_hat_list, _ = syglasso_palm(X, X_kGram, lambda, Psi0, fun = fun)

Example code for fitting a KPCA covariance model:

using TensorGraphicalModels

px = py = 25 #works for K=2 modes only
N = 100
X = zeros((px * py, N))

for i=1:N
    X[:, i] .= vec(rand(MatrixNormal(zeros((px, py)), ScalMat(px, 2.0), ScalMat(py, 4.0))))
end

S = cov(copy(X')) #sample covariance matrix
lambdaL = 20 * (px^2 + py^2 + log(max(px, py, N))) / N
lambdaS = 20 * sqrt(log(px * py)/N)

# robust Kronecker PCA methods using singular value thresholding
Sigma_hat = robust_kron_pca(S, px, py, lambdaL, lambdaS, "SVT"; tau = 0.5, r = 5)
Owner
Wayne Wang
Ph.D. candidate in statistics
Wayne Wang
Hyperparameter tuning for humans

KerasTuner KerasTuner is an easy-to-use, scalable hyperparameter optimization framework that solves the pain points of hyperparameter search. Easily c

Keras 2.6k Dec 27, 2022
ConvMixer unofficial implementation

ConvMixer ConvMixer 非官方实现 pytorch 版本已经实现。 nets 是重构版本 ,test 是官方代码 感兴趣小伙伴可以对照看一下。 keras 已经实现 tf2.x 中 是tensorflow 2 版本 gelu 激活函数要求 tf=2.4 否则使用入下代码代替gelu

Jian Tengfei 8 Jul 11, 2022
A project to build an AI voice assistant using Python . The Voice assistant interacts with the humans to perform basic tasks.

AI_Personal_Voice_Assistant_Using_Python A project to build an AI voice assistant using Python . The Voice assistant interacts with the humans to perf

Chumui Tripura 1 Oct 30, 2021
Potato Disease Classification - Training, Rest APIs, and Frontend to test.

Potato Disease Classification Setup for Python: Install Python (Setup instructions) Install Python packages pip3 install -r training/requirements.txt

codebasics 95 Dec 21, 2022
CFNet: Cascade and Fused Cost Volume for Robust Stereo Matching(CVPR2021)

CFNet(CVPR 2021) This is the implementation of the paper CFNet: Cascade and Fused Cost Volume for Robust Stereo Matching, CVPR 2021, Zhelun Shen, Yuch

106 Dec 28, 2022
SMPL-X: A new joint 3D model of the human body, face and hands together

SMPL-X: A new joint 3D model of the human body, face and hands together [Paper Page] [Paper] [Supp. Mat.] Table of Contents License Description News I

Vassilis Choutas 1k Jan 09, 2023
Car Price Predictor App used to predict the price of the car based on certain input parameters created using python's scikit-learn, fastapi, numpy and joblib packages.

Pricefy Car Price Predictor App used to predict the price of the car based on certain input parameters created using python's scikit-learn, fastapi, n

Siva Prakash 1 May 10, 2022
An example project demonstrating how the Autonomous Learning Library can be used to build new reinforcement learning agents.

About This repository shows how Autonomous Learning Library can be used to build new reinforcement learning agents. In particular, it contains a model

Chris Nota 5 Aug 30, 2022
Transformer Tracking (CVPR2021)

TransT - Transformer Tracking [CVPR2021] Official implementation of the TransT (CVPR2021) , including training code and trained models. We are revisin

chenxin 465 Jan 06, 2023
Official PyTorch Implementation of Mask-aware IoU and maYOLACT Detector [BMVC2021]

The official implementation of Mask-aware IoU and maYOLACT detector. Our implementation is based on mmdetection. Mask-aware IoU for Anchor Assignment

Kemal Oksuz 46 Sep 29, 2022
Guided Internet-delivered Cognitive Behavioral Therapy Adherence Forecasting

Guided Internet-delivered Cognitive Behavioral Therapy Adherence Forecasting #Dataset The folder "Dataset" contains the dataset use in this work and m

0 Jan 08, 2022
[CVPR'22] Official PyTorch Implementation of Collaborative Transformers for Grounded Situation Recognition

[CVPR'22] Collaborative Transformers for Grounded Situation Recognition Paper | Model Checkpoint This is the official PyTorch implementation of Collab

Junhyeong Cho 29 Dec 10, 2022
Home for cuQuantum Python & NVIDIA cuQuantum SDK C++ samples

Welcome to the cuQuantum repository! This public repository contains two sets of files related to the NVIDIA cuQuantum SDK: samples: All C/C++ sample

NVIDIA Corporation 147 Dec 27, 2022
Official implementation for the paper: Multi-label Classification with Partial Annotations using Class-aware Selective Loss

Multi-label Classification with Partial Annotations using Class-aware Selective Loss Paper | Pretrained models Official PyTorch Implementation Emanuel

99 Dec 27, 2022
NeurIPS'21 Tractable Density Estimation on Learned Manifolds with Conformal Embedding Flows

NeurIPS'21 Tractable Density Estimation on Learned Manifolds with Conformal Embedding Flows This repo contains the code for the paper Tractable Densit

Layer6 Labs 4 Dec 12, 2022
A heterogeneous entity-augmented academic language model based on Open Academic Graph (OAG)

Library | Paper | Slack We released two versions of OAG-BERT in CogDL package. OAG-BERT is a heterogeneous entity-augmented academic language model wh

THUDM 58 Dec 17, 2022
Code for our work "Activation to Saliency: Forming High-Quality Labels for Unsupervised Salient Object Detection".

A2S-USOD Code for our work "Activation to Saliency: Forming High-Quality Labels for Unsupervised Salient Object Detection". Code will be released upon

15 Dec 16, 2022
HW3 ― GAN, ACGAN and UDA

HW3 ― GAN, ACGAN and UDA In this assignment, you are given datasets of human face and digit images. You will need to implement the models of both GAN

grassking100 1 Dec 13, 2021
Emblaze - Interactive Embedding Comparison

Emblaze - Interactive Embedding Comparison Emblaze is a Jupyter notebook widget for visually comparing embeddings using animated scatter plots. It bun

CMU Data Interaction Group 77 Nov 24, 2022
Official code for the paper: Deep Graph Matching under Quadratic Constraint (CVPR 2021)

QC-DGM This is the official PyTorch implementation and models for our CVPR 2021 paper: Deep Graph Matching under Quadratic Constraint. It also contain

Quankai Gao 55 Nov 14, 2022