This package implements the algorithms introduced in Smucler, Sapienza, and Rotnitzky (2020) to compute optimal adjustment sets in causal graphical models.

Overview

optimaladj: A library for computing optimal adjustment sets in causal graphical models

This package implements the algorithms introduced in Smucler, Sapienza and Rotnitzky (2021) and Smucler and Rotnitzky (2022) to compute optimal adjustment sets in causal graphical models. The package provides a class, called CasualGraph, that inherits from networkx's DiGraph class and has methods to compute: the optimal, optimal minimal, optimal minimum cardinality and optimal minimum cost adjustment sets for individualized treatment rules (point exposure dynamic treatment regimes) in non-parametric causal graphical models with latent variables.

Suppose we are given a causal graph G specifying:

  • a treatment variable A,
  • an outcome variable Y,
  • a set of observable (that is, non-latent) variables N,
  • a set of observable variables that will be used to allocate treatment L, and possibly
  • positive costs associated with each observable variable.

Suppose moreover that there exists at least one adjustment set with respect to A and Y in G that is comprised of observable variables.

An optimal adjustment set is an observable adjustment set that yields the non-parametric estimator of the interventional mean with the smallest asymptotic variance among those that are based on observable adjustment sets.

An optimal minimal adjustment set is an observable adjustment set that yields the non-parametric estimator of the interventional mean with the smallest asymptotic variance among those that are based on observable minimal adjustment sets. An observable minimal adjustment set is a valid adjustment set such that all its variables are observable and the removal of any variable from it destroys validity.

An optimal minimum cardinality adjustment set is an observable adjustment set that has minimum possible cardinality and yields the non-parametric estimator of the interventional mean with the smallest asymptotic variance among those that are based on observable minimum cardinality adjustment sets.

An optimal minimum cost adjustment set is defined similarly, being optimal in the class of observable adjustment sets that have minimum possible cost.

Under these assumptions, Smucler, Sapienza and Rotnitzky (2020) and Smucler and Rotnitzky (2022) show that optimal minimal, optimal minimum cardinality and optimal minimum cost adjustment sets always exist, and can be computed in polynomial time. They also provide a sufficient criterion for the existance of an optimal adjustment set and a polynomial time algorithm to compute it when it exists.

Check out our notebook with examples.

Installation

You can install the stable version of the package from PyPI by running

pip install optimaladj

You can install the development version of the package from Github by running

pip install git+https://github.com/facusapienza21/optimaladj.git#egg=optimaladj
Owner
Facundo Sapienza
PhD Student at UC Berkeley interested in Machine Learning and Physics. Previously studied Physics and Mathematics in the University of Buenos Aires
Facundo Sapienza
This repository comes with the paper "On the Robustness of Counterfactual Explanations to Adverse Perturbations"

Robust Counterfactual Explanations This repository comes with the paper "On the Robustness of Counterfactual Explanations to Adverse Perturbations". I

Marco 5 Dec 20, 2022
PyTorch implementation of DeepDream algorithm

neural-dream This is a PyTorch implementation of DeepDream. The code is based on neural-style-pt. Here we DeepDream a photograph of the Golden Gate Br

121 Nov 05, 2022
Blender scripts for computing geodesic distance

GeoDoodle Geodesic distance computation for Blender meshes Table of Contents Overivew Usage Implementation Overview This addon provides an operator fo

20 Jun 08, 2022
Evolution Strategies in PyTorch

Evolution Strategies This is a PyTorch implementation of Evolution Strategies. Requirements Python 3.5, PyTorch = 0.2.0, numpy, gym, universe, cv2 Wh

Andrew Gambardella 333 Nov 14, 2022
Unsupervised Representation Learning via Neural Activation Coding

Neural Activation Coding This repository contains the code for the paper "Unsupervised Representation Learning via Neural Activation Coding" published

yookoon park 5 May 26, 2022
Earthquake detection via fiber optic cables using deep learning

Earthquake detection via fiber optic cables using deep learning Author: Fantine Huot Getting started Update the submodules After cloning the repositor

Fantine 4 Nov 30, 2022
AquaTimer - Programmable Timer for Aquariums based on ATtiny414/814/1614

AquaTimer - Programmable Timer for Aquariums based on ATtiny414/814/1614 AquaTimer is a programmable timer for 12V devices such as lighting, solenoid

Stefan Wagner 4 Jun 13, 2022
An official implementation of the Anchor DETR.

Anchor DETR: Query Design for Transformer-Based Detector Introduction This repository is an official implementation of the Anchor DETR. We encode the

MEGVII Research 276 Dec 28, 2022
Cancer-and-Tumor-Detection-Using-Inception-model - In this repo i am gonna show you how i did cancer/tumor detection in lungs using deep neural networks, specifically here the Inception model by google.

Cancer-and-Tumor-Detection-Using-Inception-model In this repo i am gonna show you how i did cancer/tumor detection in lungs using deep neural networks

Deepak Nandwani 1 Jan 01, 2022
Walk with fastai

Shield: This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. Walk with fastai What is this p

Walk with fastai 124 Dec 10, 2022
Repository containing detailed experiments related to the paper "Memotion Analysis through the Lens of Joint Embedding".

Memotion Analysis Through The Lens Of Joint Embedding This repository contains the experiments conducted as described in the paper 'Memotion Analysis

Nethra Gunti 1 Mar 16, 2022
Selfplay In MultiPlayer Environments

This project allows you to train AI agents on custom-built multiplayer environments, through self-play reinforcement learning.

200 Jan 08, 2023
The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data

Turing Change Point Detection Benchmark Welcome to the repository for the Turing Change Point Detection Benchmark, a benchmark evaluation of change po

The Alan Turing Institute 85 Dec 28, 2022
A simple python module to generate anchor (aka default/prior) boxes for object detection tasks.

PyBx WIP A simple python module to generate anchor (aka default/prior) boxes for object detection tasks. Calculated anchor boxes are returned as ndarr

thatgeeman 4 Dec 15, 2022
Defocus Map Estimation and Deblurring from a Single Dual-Pixel Image

Defocus Map Estimation and Deblurring from a Single Dual-Pixel Image This repository is an implementation of the method described in the following pap

21 Dec 15, 2022
kapre: Keras Audio Preprocessors

Kapre Keras Audio Preprocessors - compute STFT, ISTFT, Melspectrogram, and others on GPU real-time. Tested on Python 3.6 and 3.7 Why Kapre? vs. Pre-co

Keunwoo Choi 867 Dec 29, 2022
Machine Learning Toolkit for Kubernetes

Kubeflow the cloud-native platform for machine learning operations - pipelines, training and deployment. Documentation Please refer to the official do

Kubeflow 12.1k Jan 03, 2023
AlphaBot2 Pi Core software for interfacing with the various components.

AlphaBot2-Pi-Core AlphaBot2 Pi Core software for interfacing with the various components. This project is currently a W.I.P. I will update this readme

KyleDev 1 Feb 13, 2022
WSDM2022 "A Simple but Effective Bidirectional Extraction Framework for Relational Triple Extraction"

BiRTE WSDM2022 "A Simple but Effective Bidirectional Extraction Framework for Relational Triple Extraction" Requirements The main requirements are: py

9 Dec 27, 2022
Dataset and Code for the paper "DepthTrack: Unveiling the Power of RGBD Tracking" (ICCV2021), and "Depth-only Object Tracking" (BMVC2021)

DeT and DOT Code and datasets for "DepthTrack: Unveiling the Power of RGBD Tracking" (ICCV2021) "Depth-only Object Tracking" (BMVC2021) @InProceedings

Yan Song 55 Dec 15, 2022