MISSFormer: An Effective Medical Image Segmentation Transformer

Overview

MISSFormer

Code for paper "MISSFormer: An Effective Medical Image Segmentation Transformer". Please read our preprint at the following link: paper_address.

1. Environment

  • Please prepare an environment with Ubuntu 20.04, with Python 3.6.13, PyTorch 1.8.0, and CUDA 11.1.1.

2. Train/Test

  • Train
python train.py --dataset Synapse --root_path your DATA_DIR --max_epochs 400 --output_dir your OUT_DIR  --img_size 224 --base_lr 0.05 --batch_size 24
  • Test
python test.py --dataset Synapse --is_savenii --volume_path your DATA_DIR --output_dir your OUT_DIR --max_epoch 400 --base_lr 0.05 --img_size 224 --batch_size 24

References

@article{huang2021missformer,
  title={MISSFormer: An Effective Medical Image Segmentation Transformer},
  author={Huang, Xiaohong and Deng, Zhifang and Li, Dandan and Yuan, Xueguang},
  journal={arXiv preprint arXiv:2109.07162},
  year={2021}
}
Owner
Fong
Fong
Mesh TensorFlow: Model Parallelism Made Easier

Mesh TensorFlow - Model Parallelism Made Easier Introduction Mesh TensorFlow (mtf) is a language for distributed deep learning, capable of specifying

1.3k Dec 26, 2022
UI2I via StyleGAN2 - Unsupervised image-to-image translation method via pre-trained StyleGAN2 network

We proposed an unsupervised image-to-image translation method via pre-trained StyleGAN2 network. paper: Unsupervised Image-to-Image Translation via Pr

208 Dec 30, 2022
Inteligência artificial criada para realizar interação social com idosos.

IA SONIA 4.0 A SONIA foi inspirada no assistente mais famoso do mundo e muito bem conhecido JARVIS. Todo mundo algum dia ja sonhou em ter o seu própri

Vinícius Azevedo 2 Oct 21, 2021
CoANet: Connectivity Attention Network for Road Extraction From Satellite Imagery

CoANet: Connectivity Attention Network for Road Extraction From Satellite Imagery This paper (CoANet) has been published in IEEE TIP 2021. This code i

Jie Mei 53 Dec 03, 2022
Inverse Optimal Control Adapted to the Noise Characteristics of the Human Sensorimotor System

Inverse Optimal Control Adapted to the Noise Characteristics of the Human Sensorimotor System This repository contains code for the paper Schultheis,

2 Oct 28, 2022
TCube generates rich and fluent narratives that describes the characteristics, trends, and anomalies of any time-series data (domain-agnostic) using the transfer learning capabilities of PLMs.

TCube: Domain-Agnostic Neural Time series Narration This repository contains the code for the paper: "TCube: Domain-Agnostic Neural Time series Narrat

Mandar Sharma 7 Oct 31, 2021
Python parser for DTED data.

DTED Parser This is a package written in pure python (with help from numpy) to parse and investigate Digital Terrain Elevation Data (DTED) files. This

Ben Bonenfant 12 Dec 18, 2022
Towards the D-Optimal Online Experiment Design for Recommender Selection (KDD 2021)

Towards the D-Optimal Online Experiment Design for Recommender Selection (KDD 2021) Contact 0 Jan 11, 2022

A new GCN model for Point Cloud Analyse

Pytorch Implementation of PointNet and PointNet++ This repo is implementation for VA-GCN in pytorch. Classification (ModelNet10/40) Data Preparation D

12 Feb 02, 2022
NR-GAN: Noise Robust Generative Adversarial Networks

Lexicon Enhanced Chinese Sequence Labeling Using BERT Adapter Code and checkpoints for the ACL2021 paper "Lexicon Enhanced Chinese Sequence Labelling

Takuhiro Kaneko 59 Dec 11, 2022
The dynamics of representation learning in shallow, non-linear autoencoders

The dynamics of representation learning in shallow, non-linear autoencoders The package is written in python and uses the pytorch implementation to ML

Maria Refinetti 4 Jun 08, 2022
[CVPR 2021] Released code for Counterfactual Zero-Shot and Open-Set Visual Recognition

Counterfactual Zero-Shot and Open-Set Visual Recognition This project provides implementations for our CVPR 2021 paper Counterfactual Zero-S

144 Dec 24, 2022
Civsim is a basic civilisation simulation and modelling system built in Python 3.8.

Civsim Introduction Civsim is a basic civilisation simulation and modelling system built in Python 3.8. It requires the following packages: perlin_noi

17 Aug 08, 2022
Open source hardware and software platform to build a small scale self driving car.

Donkeycar is minimalist and modular self driving library for Python. It is developed for hobbyists and students with a focus on allowing fast experimentation and easy community contributions.

Autorope 2.4k Jan 04, 2023
Facial Image Inpainting with Semantic Control

Facial Image Inpainting with Semantic Control In this repo, we provide a model for the controllable facial image inpainting task. This model enables u

Ren Yurui 8 Nov 22, 2021
SphereFace: Deep Hypersphere Embedding for Face Recognition

SphereFace: Deep Hypersphere Embedding for Face Recognition By Weiyang Liu, Yandong Wen, Zhiding Yu, Ming Li, Bhiksha Raj and Le Song License SphereFa

Weiyang Liu 1.5k Dec 29, 2022
Spatial Intention Maps for Multi-Agent Mobile Manipulation (ICRA 2021)

spatial-intention-maps This code release accompanies the following paper: Spatial Intention Maps for Multi-Agent Mobile Manipulation Jimmy Wu, Xingyua

Jimmy Wu 70 Jan 02, 2023
MATLAB codes of the book "Digital Image Processing Fourth Edition" converted to Python

Digital Image Processing Python MATLAB codes of the book "Digital Image Processing Fourth Edition" converted to Python TO-DO: Refactor scripts, curren

Merve Noyan 24 Oct 16, 2022
Patch-Diffusion Code (AAAI2022)

Patch-Diffusion This is an official PyTorch implementation of "Patch Diffusion: A General Module for Face Manipulation Detection" in AAAI2022. Require

H 7 Nov 02, 2022
SketchEdit: Mask-Free Local Image Manipulation with Partial Sketches

SketchEdit: Mask-Free Local Image Manipulation with Partial Sketches [Paper]  [Project Page]  [Interactive Demo]  [Supplementary Material]        Usag

215 Dec 25, 2022